rs67625472 chr19:4968609 T>C
- Sequence
agcctgcacgttcccggccggtgc[T/C]gatgctgtgctgggtctcacgtac
- ASB in cell types
- K562 (myelogenous leukemia) HEK293 (embryonic kidney) spleen GM12878 (female B-cells)
- ASB for transcription factors
- CTCF_HUMAN KAISO_HUMAN GATA1_HUMAN CREB1_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | -0.04 | 1.70 | 1.76 | 2.25 | Concordant | |||
| KAISO_HUMAN | 2.10 | n/a | 1.33 | n/a | No Hit | |||
| GATA1_HUMAN | 0.20 | 1.86 | 1.78 | n/a | No Hit | |||
| CREB1_HUMAN | 1.25 | -1.14 | 1.67 | n/a | No Hit | |||
| SP7_HUMAN | -2.97 | 2.26 | 2.00 | n/a | n/a |
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Motif analysis
