rs676614 chr1:35641909 C>A
- Sequence
cttgaggggagccttacttccatc[C/A]ttcacaaaaatagtatatggttgg
- ASB in cell types
- GM12878 (female B-cells)
- ASB for transcription factors
- FOXK2_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| FOXK2_HUMAN | -2.08 | 2.00 | 1.33 | n/a | n/a |
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Motif analysis
No data available
Genetic associations
GRASP bipolar disorder, bipolar disorder, combined control dataset, comorbid depressive syndrome and alcohol dependence, hdl cholesterol, hdl cholesterol change with statins, ldl cholesterol, rheumatoid arthritis
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Artery_Tibial, Brain_Cerebellum, Cells_Cultured_fibroblasts, Cells_EBV-transformed_lymphocytes, Esophagus_Mucosa, Esophagus_Muscularis, Muscle_Skeletal, Nerve_Tibial, Pancreas, Skin_Sun_Exposed_Lower_leg, Stomach, Whole_Blood