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rs6782149 chr3:32527604 C>T

Sequence
cattttggaaaacattttggcagt[C/T]cttcaaaacctttgtttaaaccga
ASB in cell types
LNCaP (prostate carcinoma)
ASB for transcription factors
FOXA1_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (C) ASB
color scale alt
-log10 FDR of Alt (T) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
FOXA1_HUMAN 0.80 -0.09 5.8·10-31.00 1.46 n/a No Hit
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Motif analysis

No data available

Genetic associations

EMBL-EBI bitter taste perception (6-n-propylthiouracil) in obesity with metabolic syndrome
GRASP diabetic retinopathy in type 2 diabetes mellitus,  ldl cholesterol,  rheumatoid arthritis,  schizophrenia,  total cholesterol,  triglycerides
GTEx eQTL Adipose_Subcutaneous,  Cells_Cultured_fibroblasts,  Skin_Not_Sun_Exposed_Suprapubic,  Thyroid

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