rs6785366 chr3:178084409 G>T
- Sequence
ggtctcttgtgctcattttatcca[G/T]tagggggacacaaaaatgtgctca
- ASB in cell types
- bipolar neuron SK-N-SH (neuroblastoma) IPSC-derived bipolar neuron 22RV1 (prostate carcinoma)
- ASB for transcription factors
- CTCF_HUMAN PKNX1_HUMAN RAD21_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | 2.15 | -0.37 | 1.31 | -2.76 | Concordant | |||
| PKNX1_HUMAN | 1.25 | n/a | 2.00 | n/a | No Hit | |||
| RAD21_HUMAN | 1.49 | -1.51 | 1.33 | n/a | n/a |
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Motif analysis
