rs67871862 chr5:109689041 T>C
- Sequence
gaaatagtgagcccgaagagaatg[T/C]gcaagccctcttctcttgcatttc
- ASB in cell types
- K562 (myelogenous leukemia) GM12878 (female B-cells) MCF7 (Invasive ductal breast carcinoma)
- ASB for transcription factors
- NRF1_HUMAN CLOCK_HUMAN TIF1A_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| NRF1_HUMAN | n/a | 2.85 | 2.00 | 4.85 | Concordant | |||
| CLOCK_HUMAN | 2.45 | n/a | 2.00 | n/a | No Hit | |||
| TIF1A_HUMAN | -1.28 | 1.66 | 2.00 | n/a | n/a |
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Motif analysis
