rs679840 chr1:212513340 G>A
- Sequence
gcagggcaagccatttggctcaag[G/A]cagcagaggtaatcctctgtttat
- ASB in cell types
- HEK293 (embryonic kidney) A549 (lung carcinoma)
- ASB for transcription factors
- EP300_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| EP300_HUMAN | 1.27 | -0.30 | 2.00 | n/a | n/a |
Items per page:
1 – 1 of 1
Motif analysis
No data available
Genetic associations
GRASP asthma, college completion, homa-b, ldl cholesterol, mitral annular calcium, total cholesterol, waist hip ratio
GTEx eQTL Artery_Tibial, Brain_Caudate_basal_ganglia, Brain_Hippocampus, Brain_Putamen_basal_ganglia, Brain_Spinal_cord_cervical_c-1, Esophagus_Mucosa, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Testis, Thyroid, Whole_Blood