rs680413 chr11:65422908 G>T
- Sequence
agagatgactgagttagatgagac[G/T]agggggcgggctgggggtgcgaga
- ASB in cell types
- A549 (lung carcinoma) CD14+ monocytes GM12878 (female B-cells) HepG2 (hepatoblastoma)
- ASB for transcription factors
- STAT1_HUMAN JUN_HUMAN CTCF_HUMAN BCL3_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| STAT1_HUMAN | -3.49 | 2.40 | 2.50 | n/a | No Hit | |||
| JUN_HUMAN | 0.10 | 1.62 | 1.95 | n/a | No Hit | |||
| CTCF_HUMAN | -0.54 | 1.15 | 1.29 | 0.98 | Weak Concordant | |||
| BCL3_HUMAN | -0.40 | 1.74 | 2.00 | n/a | n/a | |||
| TF65_HUMAN | n/a | 2.54 | 2.50 | n/a | No Hit |
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Motif analysis
Genetic associations
GTEx eQTL Artery_Aorta, Artery_Tibial, Brain_Putamen_basal_ganglia, Cells_Cultured_fibroblasts, Colon_Sigmoid, Esophagus_Gastroesophageal_Junction, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Left_Ventricle, Muscle_Skeletal, Nerve_Tibial, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Testis, Thyroid