rs680721 chr1:182615071 A>G
- Sequence
gctcgccgccccgggctctgtggc[A/G]ccatcagcagcttgcgcaggacac
- ASB in cell types
- neural cell breast tumor tissue
- ASB for transcription factors
- CTCF_HUMAN ESR1_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (A) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | n/a | 2.88 | 1.33 | 2.47 | Concordant | |||
| ESR1_HUMAN | 1.73 | n/a | 2.50 | n/a | No Hit |
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Motif analysis
Genetic associations
GTEx eQTL Artery_Aorta, Artery_Coronary, Artery_Tibial, Cells_Cultured_fibroblasts, Esophagus_Mucosa, Heart_Atrial_Appendage, Muscle_Skeletal, Nerve_Tibial, Testis