ADASTRA v1.6.10
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rs6816508
chr4:110036187
T
>
A
Sequence
ccttaaggtttacatgcatttaac[T/A]tcctgtacaattaaatttctgctt
ASB in cell types
VCaP (prostate carcinoma)
ASB for transcription factors
FOXA1_HUMAN
ANDR_HUMAN
Search SNPs nearby
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Color scale
-log10 FDR of Ref (
T
) ASB
-log10 FDR of Alt (
A
) ASB
Details
Transcription factors
Cell types
Effect size Ref
(+6 others)
Selected columns
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Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
FOXA1_HUMAN
-1.97
2.04
1.00
6.6·10
-3
2.00
n/a
No Hit
ANDR_HUMAN
-1.68
1.74
1.00
0.04
2.00
n/a
No Hit
Items per page:
5
1 – 2 of 2
Motif analysis
No data available
Genetic associations
GRASP
advanced age-related macular degeneration
,
advanced age-related macular degeneration (choroidal neovascularization) vs. no amd
,
ldl cholesterol
,
lp-pla2 activity
,
salmonella-induced pyroptosis
,
triglycerides
GTEx eQTL
Cells_Cultured_fibroblasts
,
Whole_Blood
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Generated by ADASTRA database
2020.06.22 v1.6.10 Soos
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SNP set annotation with ANANASTRA
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log2-scale
log2(Alt/Ref motif p-value)