rs681673 chr1:67686705 T>C
- Sequence
gggtcaggagggtggctgcctttg[T/C]ccgactagagtgtggctggacttt
- ASB in cell types
- K562 (myelogenous leukemia) MCF7 (Invasive ductal breast carcinoma) HepG2 (hepatoblastoma) foreskin keratinocyte
- ASB for transcription factors
- ATF3_HUMAN MNT_HUMAN HDAC1_HUMAN CEBPB_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| ATF3_HUMAN | n/a | 0.73 | 2.00 | n/a | No Hit | |||
| MNT_HUMAN | -0.36 | 1.59 | 1.81 | n/a | n/a | |||
| HDAC1_HUMAN | -0.05 | 1.95 | 1.83 | n/a | n/a | |||
| CEBPB_HUMAN | 0.59 | 2.30 | 1.67 | n/a | No Hit | |||
| NFE2_HUMAN | -0.18 | 1.71 | 1.67 | n/a | No Hit |
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Motif analysis
No data available
Genetic associations
GRASP 2 hour glucose, advanced age-related macular degeneration, advanced age-related macular degeneration (choroidal neovascularization) vs. no amd