rs683208 chr6:32970124 T>C
- Sequence
ttttctcagcctcctaagttttta[T/C]tccatggccggccccctgatgggc
- ASB in cell types
- K562 (myelogenous leukemia) HepG2 (hepatoblastoma) GM12878 (female B-cells) foreskin keratinocyte
- ASB for transcription factors
- CTCF_HUMAN HDAC1_HUMAN AFF1_HUMAN EGR1_HUMAN
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-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | 0.80 | 0.23 | 1.59 | n/a | No Hit | |||
| HDAC1_HUMAN | 2.38 | -2.64 | 3.00 | n/a | n/a | |||
| AFF1_HUMAN | 2.18 | n/a | 3.00 | n/a | n/a | |||
| EGR1_HUMAN | 2.05 | n/a | 3.00 | n/a | No Hit | |||
| ZEB2_HUMAN | 1.71 | -1.34 | 3.00 | n/a | n/a |
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