rs6859236 chr5:151156083 G>A
- Sequence
gtggcccttatccagaaactgcaa[G/A]tattttctgtatctcagcagatgc
- ASB in cell types
- K562 (myelogenous leukemia) GM12878 (female B-cells)
- ASB for transcription factors
- MTG16_HUMAN ARI1B_HUMAN MTG8R_HUMAN SOX6_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| MTG16_HUMAN | 2.72 | n/a | 2.00 | n/a | n/a | |||
| ARI1B_HUMAN | 2.69 | n/a | 2.00 | n/a | n/a | |||
| MTG8R_HUMAN | 2.56 | n/a | 2.00 | n/a | n/a | |||
| SOX6_HUMAN | 2.52 | n/a | 2.00 | n/a | n/a | |||
| PKNX1_HUMAN | 1.25 | -1.17 | 1.67 | n/a | No Hit |
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Motif analysis
No data available
Genetic associations
GRASP irritible bowel syndrome, ldl cholesterol, rheumatoid arthritis, total cholesterol, total cholesterol change with statins
GTEx eQTL Adipose_Visceral_Omentum, Adrenal_Gland, Artery_Aorta, Artery_Tibial, Brain_Nucleus_accumbens_basal_ganglia, Cells_Cultured_fibroblasts, Colon_Sigmoid, Colon_Transverse, Esophagus_Gastroesophageal_Junction, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Atrial_Appendage, Heart_Left_Ventricle, Lung, Nerve_Tibial, Pituitary, Skin_Sun_Exposed_Lower_leg, Small_Intestine_Terminal_Ileum, Spleen, Testis, Thyroid, Whole_Blood