rs686624 chr11:119084799 T>A
- Sequence
tcatgtcacagctggggaatgggg[T/A]ggtcgaatggggaggtccactgtc
- ASB in cell types
- HEK293 (embryonic kidney) CD14+ monocytes breast tumor tissue MCF7 (Invasive ductal breast carcinoma)
- ASB for transcription factors
- ZN770_HUMAN ESR1_HUMAN STAT1_HUMAN CEBPB_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| ZN770_HUMAN | n/a | 3.09 | 1.33 | 4.78 | Concordant | |||
| ESR1_HUMAN | n/a | 2.29 | 2.50 | n/a | No Hit | |||
| STAT1_HUMAN | n/a | 2.44 | 2.50 | n/a | No Hit | |||
| CEBPB_HUMAN | -0.73 | 1.46 | 2.21 | n/a | No Hit | |||
| REST_HUMAN | 1.58 | -1.49 | 1.00 | n/a | No Hit |
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Motif analysis
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Artery_Tibial, Brain_Putamen_basal_ganglia, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Colon_Sigmoid, Colon_Transverse, Esophagus_Gastroesophageal_Junction, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Atrial_Appendage, Heart_Left_Ventricle, Lung, Muscle_Skeletal, Nerve_Tibial, Pancreas, Pituitary, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Spleen, Stomach, Testis, Whole_Blood