rs686852 chr8:60652212 C>A
- Sequence
ggcatgtgccgccacccgcctccg[C/A]ctcgcagactccggggccgggacg
- ASB in cell types
- K562 (myelogenous leukemia) A549 (lung carcinoma) T47D (invasive ductal carcinoma) HEK293T (embryonic kidney)
- ASB for transcription factors
- JUN_HUMAN HIF1A_HUMAN HIF3A_HUMAN BCL3_HUMAN
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-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| JUN_HUMAN | -0.18 | 1.30 | 1.77 | n/a | No Hit | |||
| HIF1A_HUMAN | 2.72 | 0.93 | 1.75 | n/a | No Hit | |||
| HIF3A_HUMAN | 2.42 | -2.72 | 1.50 | n/a | n/a | |||
| BCL3_HUMAN | -0.61 | 1.31 | 1.64 | n/a | n/a | |||
| MGAP_HUMAN | 2.43 | n/a | 2.00 | n/a | n/a |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Artery_Aorta, Artery_Tibial, Brain_Anterior_cingulate_cortex_BA24, Brain_Caudate_basal_ganglia, Brain_Cerebellar_Hemisphere, Brain_Cerebellum, Brain_Frontal_Cortex_BA9, Brain_Nucleus_accumbens_basal_ganglia, Brain_Spinal_cord_cervical_c-1, Cells_Cultured_fibroblasts, Cells_EBV-transformed_lymphocytes, Colon_Sigmoid, Colon_Transverse, Esophagus_Gastroesophageal_Junction, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Atrial_Appendage, Heart_Left_Ventricle, Liver, Lung, Muscle_Skeletal, Nerve_Tibial, Pancreas, Prostate, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Spleen, Stomach, Testis, Thyroid, Whole_Blood