rs687351 chr8:60652088 A>C
- Sequence
acggcggcggcccctcgggcagct[A/C]ccagtccccgcgggatgcccggct
- ASB in cell types
- K562 (myelogenous leukemia) A549 (lung carcinoma) HEK293T (embryonic kidney) GM12878 (female B-cells)
- ASB for transcription factors
- JUN_HUMAN BCL3_HUMAN SMC3_HUMAN LMBL2_HUMAN
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-log10 FDR of Ref (A) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| JUN_HUMAN | -0.22 | 1.42 | 1.73 | n/a | No Hit | |||
| BCL3_HUMAN | -0.59 | 1.28 | 1.64 | n/a | n/a | |||
| SMC3_HUMAN | -1.44 | 1.67 | 1.00 | n/a | n/a | |||
| LMBL2_HUMAN | 1.08 | 1.90 | 2.00 | n/a | n/a | |||
| FOXK2_HUMAN | n/a | 1.59 | 1.33 | n/a | n/a |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Artery_Aorta, Artery_Tibial, Brain_Caudate_basal_ganglia, Brain_Cerebellar_Hemisphere, Brain_Cerebellum, Brain_Cortex, Brain_Hippocampus, Brain_Nucleus_accumbens_basal_ganglia, Brain_Spinal_cord_cervical_c-1, Cells_Cultured_fibroblasts, Cells_EBV-transformed_lymphocytes, Colon_Sigmoid, Colon_Transverse, Esophagus_Gastroesophageal_Junction, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Atrial_Appendage, Heart_Left_Ventricle, Liver, Lung, Muscle_Skeletal, Nerve_Tibial, Pancreas, Prostate, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Spleen, Stomach, Testis, Thyroid, Whole_Blood