rs6877020 chr5:176647170 G>A
- Sequence
tccggcgccatcagccggcgtccc[G/A]ggcgggtctgcaggacgctgggaa
- ASB in cell types
- A549 (lung carcinoma) erythroid cells MCF7 (Invasive ductal breast carcinoma) heart left ventricle
- ASB for transcription factors
- CTCF_HUMAN SMC3_HUMAN ZFX_HUMAN ZN143_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | 0.76 | 1.12 | 1.54 | n/a | No Hit | |||
| SMC3_HUMAN | -0.47 | 0.90 | 1.89 | n/a | n/a | |||
| ZFX_HUMAN | 1.05 | -0.48 | 2.00 | n/a | No Hit | |||
| ZN143_HUMAN | 2.68 | n/a | 3.00 | n/a | No Hit | |||
| JUN_HUMAN | -0.15 | 1.25 | 2.00 | n/a | No Hit |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Cells_Cultured_fibroblasts, Colon_Transverse, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Whole_Blood