rs688378 chr1:116596434 G>C
- Sequence
cgctggttcggagctctggtatcc[G/C]caagtcttagagccaccttgtggc
- ASB in cell types
- MCF7 (Invasive ductal breast carcinoma) 22RV1 (prostate carcinoma) liver HCPEpiC (choroid plexus epithelial cells)
- ASB for transcription factors
- CTCF_HUMAN RAD21_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | 1.62 | -0.23 | 1.67 | n/a | No Hit | |||
| RAD21_HUMAN | 1.71 | -0.91 | 1.33 | n/a | n/a |
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