rs688659 chr1:241638293 C>T
- Sequence
gaaaaacaggaagggagaagtgac[C/T]aggagacacaggagggtgggatca
- ASB in cell types
- K562 (myelogenous leukemia) HEK293 (embryonic kidney) HEK293T (embryonic kidney)
- ASB for transcription factors
- IKZF1_HUMAN RING2_HUMAN ZN335_HUMAN KDM1A_HUMAN
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-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| IKZF1_HUMAN | -0.17 | 2.25 | 2.28 | n/a | No Hit | |||
| RING2_HUMAN | n/a | 2.77 | 2.50 | n/a | n/a | |||
| ZN335_HUMAN | n/a | 2.65 | 4.00 | n/a | No Hit | |||
| KDM1A_HUMAN | -2.67 | 1.94 | 2.50 | n/a | n/a |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Artery_Aorta, Artery_Tibial, Brain_Nucleus_accumbens_basal_ganglia, Brain_Putamen_basal_ganglia, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Colon_Sigmoid, Esophagus_Gastroesophageal_Junction, Esophagus_Muscularis, Heart_Atrial_Appendage, Heart_Left_Ventricle, Lung, Muscle_Skeletal, Nerve_Tibial, Pancreas, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Thyroid, Whole_Blood