rs6887495 chr5:104179305 C>A
- Sequence
gtcaacagcaccacctagtggcat[C/A]gagataatctccatgaggcacacc
- ASB in cell types
- MCF7 (Invasive ductal breast carcinoma) HeLa S3 (cervical adenocarcinoma) HUVEC (umbilical vein endothelial cells) HEK293T (embryonic kidney)
- ASB for transcription factors
- CTCF_HUMAN RAD21_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | 1.07 | 0.63 | 1.59 | -1.11 | Weak Concordant | |||
| RAD21_HUMAN | 1.03 | -0.05 | 1.80 | n/a | n/a |
Items per page:
1 – 2 of 2
Motif analysis
