rs6919992 chr6:3020196 C>G
- Sequence
atccagtccactgttgatgggcac[C/G]tgggttgattccatgtctttgcta
- ASB in cell types
- K562 (myelogenous leukemia)
- ASB for transcription factors
- SPT5H_HUMAN NFIC_HUMAN KDM1A_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| SPT5H_HUMAN | n/a | 2.79 | 3.00 | n/a | n/a | |||
| NFIC_HUMAN | n/a | 2.28 | 3.00 | -2.02 | Discordant | |||
| KDM1A_HUMAN | -3.25 | 2.09 | 3.00 | n/a | n/a |
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Motif analysis
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Brain_Anterior_cingulate_cortex_BA24, Brain_Caudate_basal_ganglia, Brain_Cerebellar_Hemisphere, Brain_Cerebellum, Brain_Cortex, Brain_Frontal_Cortex_BA9, Brain_Hypothalamus, Brain_Nucleus_accumbens_basal_ganglia, Colon_Sigmoid, Colon_Transverse, Esophagus_Gastroesophageal_Junction, Esophagus_Muscularis, Lung, Muscle_Skeletal, Nerve_Tibial, Pancreas, Pituitary, Skin_Not_Sun_Exposed_Suprapubic, Small_Intestine_Terminal_Ileum, Stomach, Testis, Thyroid