rs693289 chr19:55599670 C>T
- Sequence
gccctggaggttgaagaagccagg[C/T]ccgcgccatcttgggtgagggcag
- ASB in cell types
- K562 (myelogenous leukemia) HEK293 (embryonic kidney) GM12878 (female B-cells)
- ASB for transcription factors
- NRF1_HUMAN TAF9B_HUMAN KLF8_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| NRF1_HUMAN | 1.57 | -0.17 | 2.00 | -3.66 | Concordant | |||
| TAF9B_HUMAN | 2.30 | n/a | 2.00 | n/a | n/a | |||
| KLF8_HUMAN | n/a | 2.16 | 2.00 | n/a | No Hit |
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Motif analysis
