rs6964992 chr7:159013263 C>T
- Sequence
tcagattgggattgaggtcgaggt[C/T]ggggtcggggtcagggttggggtc
- ASB in cell types
- K562 (myelogenous leukemia) MCF7 (Invasive ductal breast carcinoma)
- ASB for transcription factors
- KDM1A_HUMAN TIF1A_HUMAN ERR1_HUMAN ESR1_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| KDM1A_HUMAN | 2.52 | -2.68 | 1.50 | n/a | n/a | |||
| TIF1A_HUMAN | 2.69 | -3.10 | 1.50 | n/a | n/a | |||
| ERR1_HUMAN | 2.23 | -0.15 | 1.78 | n/a | No Hit | |||
| ESR1_HUMAN | 0.44 | 0.87 | 2.41 | n/a | No Hit | |||
| THA_HUMAN | 2.22 | -2.56 | 1.50 | n/a | No Hit |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Artery_Tibial, Colon_Sigmoid, Esophagus_Mucosa, Heart_Atrial_Appendage, Muscle_Skeletal, Nerve_Tibial, Pancreas, Testis, Thyroid