rs698422 chr22:19218317 A>T
- Sequence
gatgtctgggaacctggatgtaga[A/T]ccctagtagaatattgtgttgttt
- ASB in cell types
- K562 (myelogenous leukemia) HEK293 (embryonic kidney)
- ASB for transcription factors
- KDM1A_HUMAN MNT_HUMAN FOXK2_HUMAN RFX1_HUMAN
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-log10 FDR of Ref (A) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| KDM1A_HUMAN | 2.53 | n/a | 4.00 | n/a | n/a | |||
| MNT_HUMAN | 1.80 | -2.89 | 4.00 | n/a | n/a | |||
| FOXK2_HUMAN | 1.64 | n/a | 4.00 | n/a | n/a | |||
| RFX1_HUMAN | 1.81 | n/a | 4.00 | n/a | No Hit | |||
| ZEB2_HUMAN | 2.20 | -0.45 | 3.33 | n/a | n/a |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adrenal_Gland, Artery_Aorta, Artery_Tibial, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Colon_Sigmoid, Esophagus_Gastroesophageal_Junction, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Atrial_Appendage, Heart_Left_Ventricle, Lung, Muscle_Skeletal, Nerve_Tibial, Pancreas, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Spleen, Testis, Thyroid, Whole_Blood