rs7048862 chr9:85425356 C>T
- Sequence
cccctagtggccacgtttagtttt[C/T]caggtacttagcaacaggcacccg
- ASB in cell types
- MCF7 (Invasive ductal breast carcinoma) H1 (embryonic stem cells)
- ASB for transcription factors
- CTCF_HUMAN RFX1_HUMAN RAD21_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | 0.92 | 0.63 | 1.44 | n/a | No Hit | |||
| RFX1_HUMAN | 1.77 | -2.70 | 2.00 | -1.25 | Weak Concordant | |||
| RAD21_HUMAN | 1.74 | 0.60 | 1.53 | n/a | n/a |
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Motif analysis
