rs7068179 chr10:71319686 C>T
- Sequence
tttacaccgcaaagccggttctgc[C/T]gcggccagtaggcggtgccctgcg
- ASB in cell types
- A549 (lung carcinoma) HCPEpiC (choroid plexus epithelial cells) AG04449 (fibroblasts) CD14+ monocytes
- ASB for transcription factors
- RAD21_HUMAN SMC3_HUMAN FOXA1_HUMAN CTCF_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| RAD21_HUMAN | 1.30 | 0.25 | 1.73 | n/a | n/a | |||
| SMC3_HUMAN | 1.39 | 0.33 | 1.86 | n/a | n/a | |||
| FOXA1_HUMAN | 0.23 | 1.30 | 2.00 | n/a | No Hit | |||
| CTCF_HUMAN | 1.18 | 0.61 | 1.51 | -0.04 | Weak Concordant | |||
| STAT1_HUMAN | 2.01 | 0.00 | 2.11 | n/a | No Hit |
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Motif analysis
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Artery_Aorta, Artery_Tibial, Colon_Sigmoid, Esophagus_Muscularis, Heart_Atrial_Appendage, Nerve_Tibial, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg