rs707129 chr2:156333886 C>G
- Sequence
ccaggagaggggcccgagctggct[C/G]tgggagcgtgtcccacccccgcgg
- ASB in cell types
- K562 (myelogenous leukemia) keratinocytes MDA-MB-453 (breast adenocarcinoma)
- ASB for transcription factors
- SNAI2_HUMAN ANDR_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| SNAI2_HUMAN | n/a | 2.47 | 1.50 | n/a | No Hit | |||
| ANDR_HUMAN | 1.59 | n/a | 1.50 | n/a | No Hit |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Artery_Coronary, Artery_Tibial, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Colon_Sigmoid, Esophagus_Gastroesophageal_Junction, Esophagus_Muscularis, Heart_Atrial_Appendage, Lung, Nerve_Tibial, Ovary, Thyroid