rs707911 chr6:31271800 A>C
- Sequence
gcgtgtcgtccacgtagcccactg[A/C]gatgaagcggggctctccgcggcc
- ASB in cell types
- neural cell SEM (childhood B acute lymphoblastic leukemia) 22RV1 (prostate carcinoma) HCT-116 (colon carcinoma)
- ASB for transcription factors
- CTCF_HUMAN CXXC1_HUMAN RAD21_HUMAN ZFX_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (A) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | 1.45 | -0.16 | 1.26 | n/a | No Hit | |||
| CXXC1_HUMAN | 2.56 | -3.22 | 1.33 | n/a | n/a | |||
| RAD21_HUMAN | 2.21 | -2.11 | 1.33 | n/a | n/a | |||
| ZFX_HUMAN | 2.15 | n/a | 1.33 | n/a | No Hit | |||
| SMC3_HUMAN | 1.57 | n/a | 1.33 | n/a | n/a |
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