rs7096745 chr10:67849547 C>A
- Sequence
tcatactcagggacaccgtccccc[C/A]ctccgccccccgccctccgtaagt
- ASB in cell types
- K562 (myelogenous leukemia) VCaP (prostate carcinoma) pancreas spleen
- ASB for transcription factors
- CTCF_HUMAN EP400_HUMAN GABPA_HUMAN MNT_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | -0.55 | 1.48 | 1.21 | n/a | No Hit | |||
| EP400_HUMAN | -2.15 | 1.96 | 1.33 | n/a | n/a | |||
| GABPA_HUMAN | 0.34 | 1.45 | 1.60 | n/a | No Hit | |||
| MNT_HUMAN | -0.17 | 1.62 | 1.33 | n/a | n/a | |||
| EGR1_HUMAN | -0.25 | 1.22 | 1.33 | -1.84 | Weak Discordant |
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Motif analysis
Genetic associations
GTEx eQTL Adrenal_Gland, Artery_Tibial, Colon_Transverse, Esophagus_Mucosa, Lung, Muscle_Skeletal, Pancreas, Skin_Sun_Exposed_Lower_leg, Testis, Whole_Blood