rs710177 chr22:21629916 A>G
- Sequence
gaccagcagggacacgctggtcac[A/G]gccccggccagaaaggcctccacg
- ASB in cell types
- HEK293 (embryonic kidney) foreskin keratinocyte
- ASB for transcription factors
- CTCF_HUMAN ZFX_HUMAN SP2_HUMAN HIC1_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (A) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | 0.22 | 1.36 | 1.38 | n/a | No Hit | |||
| ZFX_HUMAN | 1.61 | 0.21 | 1.33 | n/a | No Hit | |||
| SP2_HUMAN | n/a | 2.15 | 2.00 | 3.06 | Concordant | |||
| HIC1_HUMAN | -2.04 | 2.25 | 2.00 | n/a | No Hit |
Items per page:
1 – 4 of 4
Motif analysis
Genetic associations
GTEx eQTL Adipose_Visceral_Omentum, Artery_Aorta, Artery_Tibial, Brain_Cerebellar_Hemisphere, Brain_Cortex, Esophagus_Mucosa, Esophagus_Muscularis, Lung, Muscle_Skeletal, Nerve_Tibial, Skin_Sun_Exposed_Lower_leg, Thyroid, Whole_Blood