rs710220 chr1:42949675 G>T
- Sequence
gagaggagggggctggtgcattta[G/T]cagcagcagcagcagcgagctgag
- ASB in cell types
- K562 (myelogenous leukemia) cranial neural crest cells
- ASB for transcription factors
- NCOR1_HUMAN HTF4_HUMAN REQU_HUMAN SMCA4_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| NCOR1_HUMAN | n/a | 3.30 | 1.33 | n/a | n/a | |||
| HTF4_HUMAN | n/a | 3.18 | 1.33 | n/a | No Hit | |||
| REQU_HUMAN | -2.01 | 3.01 | 1.33 | n/a | n/a | |||
| SMCA4_HUMAN | -2.55 | 2.69 | 1.33 | n/a | n/a | |||
| HDAC2_HUMAN | n/a | 2.20 | 1.33 | n/a | n/a |
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Motif analysis
No data available
Genetic associations
GRASP 2 hour glucose, acute lung injury following major trauma, fasting blood glucose, rheumatoid arthritis
GTEx eQTL Adipose_Subcutaneous, Brain_Caudate_basal_ganglia, Brain_Putamen_basal_ganglia, Cells_Cultured_fibroblasts, Heart_Left_Ventricle, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg