rs7102434 chr11:62839596 A>G
- Sequence
acaaagcctggaggcagacagttc[A/G]cacttccggcgcagcgtgtgcgtc
- ASB in cell types
- cranial neural crest cells GM12878 (female B-cells) HepG2 (hepatoblastoma) HeLa S3 (cervical adenocarcinoma)
- ASB for transcription factors
- CREB1_HUMAN AP2A_HUMAN E4F1_HUMAN NFYC_HUMAN
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-log10 FDR of Ref (A) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CREB1_HUMAN | 1.98 | -0.38 | 1.40 | n/a | No Hit | |||
| AP2A_HUMAN | 2.87 | n/a | 2.00 | n/a | No Hit | |||
| E4F1_HUMAN | 2.20 | n/a | 1.33 | n/a | n/a | |||
| NFYC_HUMAN | 1.45 | -1.14 | 1.00 | n/a | No Hit |
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Motif analysis
No data available
Genetic associations
GRASP body mass index (bmi), obesity with early age of onset (age >2), serum creatinine, total cholesterol, total cholesterol change with statins
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Adrenal_Gland, Artery_Aorta, Artery_Tibial, Brain_Amygdala, Brain_Anterior_cingulate_cortex_BA24, Brain_Caudate_basal_ganglia, Brain_Cerebellar_Hemisphere, Brain_Cerebellum, Brain_Cortex, Brain_Frontal_Cortex_BA9, Brain_Hippocampus, Brain_Nucleus_accumbens_basal_ganglia, Brain_Putamen_basal_ganglia, Brain_Substantia_nigra, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Colon_Sigmoid, Colon_Transverse, Esophagus_Gastroesophageal_Junction, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Atrial_Appendage, Heart_Left_Ventricle, Lung, Minor_Salivary_Gland, Muscle_Skeletal, Nerve_Tibial, Pituitary, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Testis, Thyroid, Whole_Blood