rs711427 chr7:105521308 T>G
- Sequence
gtagtctgacgggaccaaatattt[T/G]aaaaactaaactctttgccaaccc
- ASB in cell types
- K562 (myelogenous leukemia) MCF7 (Invasive ductal breast carcinoma)
View in PheLiGe Color scale
-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Cell type | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | |
|---|---|---|---|---|---|---|
| K562 (myelogenous leukemia) | 0.50 | 0.41 | 1.43 | |||
| MCF7 (Invasive ductal breast carcinoma) | -0.03 | 0.60 | 1.40 |
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Motif analysis
No data available
Genetic associations
GRASP height, infant head circumference, prop taste detection threshold, spine bone mineral density (bmd)
GTEx eQTL Adipose_Subcutaneous, Brain_Cerebellar_Hemisphere, Brain_Cerebellum, Cells_Cultured_fibroblasts, Colon_Sigmoid, Esophagus_Gastroesophageal_Junction, Esophagus_Muscularis, Nerve_Tibial, Prostate, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Stomach, Thyroid