rs712959 chr22:19171502 C>T
- Sequence
aagatcaggggctggtggcagtga[C/T]cgcgaggggcctccaagcagccca
- ASB in cell types
- K562 (myelogenous leukemia) HEK293 (embryonic kidney) MCF7 (Invasive ductal breast carcinoma) GM12878 (female B-cells)
- ASB for transcription factors
- HDAC2_HUMAN ZN316_HUMAN NRF1_HUMAN ZN189_HUMAN
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-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| HDAC2_HUMAN | 3.18 | n/a | 4.00 | n/a | n/a | |||
| ZN316_HUMAN | 3.00 | n/a | 4.00 | n/a | n/a | |||
| NRF1_HUMAN | 0.88 | 1.35 | 3.50 | n/a | No Hit | |||
| ZN189_HUMAN | 2.24 | -3.29 | 2.00 | n/a | n/a | |||
| SMCA4_HUMAN | 2.96 | n/a | 4.00 | n/a | n/a |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adrenal_Gland, Artery_Aorta, Artery_Tibial, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Colon_Sigmoid, Esophagus_Gastroesophageal_Junction, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Atrial_Appendage, Heart_Left_Ventricle, Lung, Muscle_Skeletal, Nerve_Tibial, Pancreas, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Testis, Thyroid, Whole_Blood