rs713676 chr22:19779898 G>A
- Sequence
cctggctggcggctcccaggcgga[G/A]gcaccacggtgaggccaagtgctg
- ASB in cell types
- K562 (myelogenous leukemia) HEK293 (embryonic kidney)
- ASB for transcription factors
- NFIC_HUMAN KAISO_HUMAN ATF3_HUMAN KDM1A_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| NFIC_HUMAN | n/a | 2.73 | 4.00 | n/a | No Hit | |||
| KAISO_HUMAN | n/a | 1.01 | 4.00 | n/a | No Hit | |||
| ATF3_HUMAN | n/a | 2.57 | 4.00 | n/a | No Hit | |||
| KDM1A_HUMAN | n/a | 2.12 | 4.00 | n/a | n/a | |||
| OSR2_HUMAN | n/a | 2.64 | 2.50 | n/a | No Hit |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Artery_Tibial, Brain_Caudate_basal_ganglia, Brain_Cerebellum, Brain_Cortex, Brain_Nucleus_accumbens_basal_ganglia, Cells_Cultured_fibroblasts, Colon_Transverse, Heart_Atrial_Appendage, Muscle_Skeletal, Nerve_Tibial, Pituitary, Prostate, Skin_Sun_Exposed_Lower_leg, Stomach, Testis, Thyroid, Whole_Blood