rs7154879 chr14:21308758 C>T
- Sequence
gactccaaagcagagaggggagac[C/T]tcatgtgccgggaaaagtggctgc
- ASB in cell types
- HepG2 (hepatoblastoma) H1 (embryonic stem cells) foreskin keratinocyte NCI-H2171 (small cell lung carcinoma)
- ASB for transcription factors
- CTCF_HUMAN TBP_HUMAN TAF1_HUMAN CLOCK_HUMAN
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-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | 1.75 | 0.34 | 1.77 | n/a | No Hit | |||
| TBP_HUMAN | 2.08 | -2.21 | 1.33 | n/a | No Hit | |||
| TAF1_HUMAN | 2.00 | n/a | 1.33 | n/a | No Hit | |||
| CLOCK_HUMAN | 1.95 | -1.74 | 1.50 | 0.57 | Weak Discordant |
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Motif analysis
