rs715706 chr4:105594871 C>T
- Sequence
ttttgcaaagaaggcaaacgttat[C/T]cacatcagttagtgttgaaacatt
- ASB in cell types
- LNCaP (prostate carcinoma) VCaP (prostate carcinoma) GM12878 (female B-cells)
- ASB for transcription factors
- FOXA1_HUMAN ANDR_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| FOXA1_HUMAN | 1.32 | 1.59 | 1.67 | n/a | No Hit | |||
| ANDR_HUMAN | 0.27 | 1.26 | 1.53 | n/a | No Hit |
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Motif analysis
No data available
Genetic associations
GRASP college completion, irritible bowel syndrome, lung function, forced expiratory volume in 1 second (fev1), lung function, ratio of forced expiratory volume in 1 second (fev1) to forced vital capacity (fvc) (fev1/fvc), schizophrenia, total cholesterol change with statins
GTEx eQTL Cells_Cultured_fibroblasts, Esophagus_Muscularis, Heart_Atrial_Appendage, Lung, Muscle_Skeletal, Pancreas