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rs7172 chr1:151399662 G>A

Sequence
cccaggacagttttaccgcattcc[G/A]tccactcccgattccttcatggat
ASB in cell types
K562 (myelogenous leukemia) A549 (lung carcinoma)
ASB for transcription factors
CLOCK_HUMAN

Color scale

color scale ref
-log10 FDR of Ref (G) ASB
color scale alt
-log10 FDR of Alt (A) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
CLOCK_HUMAN -1.75 2.11 1.000.03 2.00 n/a No Hit
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Motif analysis

No data available

Genetic associations

GRASP biploar disorder (bipolar schizoaffective disorder) bipolar disorder ldl cholesterol myocardial infarction (mi) total cholesterol transmission distortion triglycerides change with statins
GTEx eQTL Adipose_Subcutaneous Adipose_Visceral_Omentum Adrenal_Gland Artery_Aorta Artery_Tibial Brain_Cerebellar_Hemisphere Brain_Cerebellum Brain_Cortex Brain_Frontal_Cortex_BA9 Brain_Nucleus_accumbens_basal_ganglia Brain_Putamen_basal_ganglia Breast_Mammary_Tissue Cells_Cultured_fibroblasts Colon_Sigmoid Esophagus_Gastroesophageal_Junction Esophagus_Mucosa Esophagus_Muscularis Heart_Atrial_Appendage Heart_Left_Ventricle Lung Muscle_Skeletal Nerve_Tibial Pituitary Prostate Skin_Not_Sun_Exposed_Suprapubic Skin_Sun_Exposed_Lower_leg Spleen Testis Thyroid Uterus Whole_Blood

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