rs7177795 chr15:67074495 T>A
- Sequence
gattgcgtaagcatgagccttttg[T/A]taggcagcgtggatgttgcaagtt
- ASB in cell types
- K562 (myelogenous leukemia) fetal bone marrow-derived mononuclear cells HepG2 (hepatoblastoma) GM12878 (female B-cells)
- ASB for transcription factors
- PKNX1_HUMAN KMT2A_HUMAN SOX13_HUMAN TIF1A_HUMAN
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-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| PKNX1_HUMAN | n/a | 2.73 | 1.67 | 5.33 | Concordant | |||
| KMT2A_HUMAN | -0.33 | 2.30 | 1.25 | n/a | n/a | |||
| SOX13_HUMAN | 1.98 | -2.26 | 1.50 | n/a | n/a | |||
| TIF1A_HUMAN | 1.96 | -1.71 | 2.00 | n/a | n/a |
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Motif analysis
Genetic associations
GRASP advanced age-related macular degeneration, advanced age-related macular degeneration (choroidal neovascularization) vs. no amd, aortic valve calcium, birth weight, coronary artery disease (cad), hdl cholesterol, ldl cholesterol, total cholesterol