rs7178594 chr15:77910724 G>A
- Sequence
tggaagtcagtgccctttggtgcc[G/A]gtatctgtcttcccggccaccgct
- ASB in cell types
- K562 (myelogenous leukemia) GM12878 (female B-cells) foreskin keratinocyte RWPE1 (prostate epithelial cells)
- ASB for transcription factors
- CTCF_HUMAN PKNX1_HUMAN RING2_HUMAN ZN143_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | 0.50 | 1.36 | 1.92 | -0.06 | Weak Discordant | |||
| PKNX1_HUMAN | -0.61 | 1.83 | 1.67 | n/a | No Hit | |||
| RING2_HUMAN | n/a | 2.49 | 2.00 | n/a | n/a | |||
| ZN143_HUMAN | -1.58 | 1.91 | 1.33 | n/a | No Hit | |||
| P53_HUMAN | -2.94 | 2.35 | 1.50 | n/a | No Hit |
Items per page:
1 – 5 of 5
Motif analysis
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Adrenal_Gland, Artery_Aorta, Artery_Coronary, Artery_Tibial, Brain_Amygdala, Brain_Anterior_cingulate_cortex_BA24, Brain_Caudate_basal_ganglia, Brain_Cerebellar_Hemisphere, Brain_Cerebellum, Brain_Cortex, Brain_Frontal_Cortex_BA9, Brain_Hippocampus, Brain_Hypothalamus, Brain_Nucleus_accumbens_basal_ganglia, Brain_Putamen_basal_ganglia, Brain_Spinal_cord_cervical_c-1, Brain_Substantia_nigra, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Colon_Sigmoid, Colon_Transverse, Esophagus_Gastroesophageal_Junction, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Atrial_Appendage, Heart_Left_Ventricle, Liver, Lung, Minor_Salivary_Gland, Muscle_Skeletal, Nerve_Tibial, Ovary, Pancreas, Pituitary, Prostate, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Small_Intestine_Terminal_Ileum, Spleen, Stomach, Testis, Thyroid, Uterus, Vagina