rs718341 chr13:110683382 C>A
- Sequence
aggcagtcttcccacctcaacctt[C/A]ccagtaggtggggctataggagtg
- ASB in cell types
- spleen pancreas SK-N-SH (neuroblastoma) Peyer's patch
- ASB for transcription factors
- CTCF_HUMAN RAD21_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | -0.28 | 1.98 | 1.31 | 1.32 | Weak Concordant | |||
| RAD21_HUMAN | 0.17 | 1.07 | 1.31 | n/a | n/a |
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Motif analysis
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Muscle_Skeletal, Nerve_Tibial, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg