rs7187776 chr16:28846324 A>G
- Sequence
ccaggagcccgagcgcacagaaga[A/G]gaagggcgcctgcggctggaaggc
- ASB in cell types
- MCF7 (Invasive ductal breast carcinoma) GM12878 (female B-cells) A549 (lung carcinoma) foreskin keratinocyte
- ASB for transcription factors
- FOXK2_HUMAN CTCF_HUMAN RFX1_HUMAN ELF1_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (A) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| FOXK2_HUMAN | 3.05 | -1.46 | 2.00 | n/a | n/a | |||
| CTCF_HUMAN | 0.46 | 0.83 | 1.33 | 2.30 | Concordant | |||
| RFX1_HUMAN | 0.07 | 1.47 | 1.83 | n/a | No Hit | |||
| ELF1_HUMAN | 0.75 | 1.55 | 1.78 | 5.20 | Concordant |
Items per page:
1 – 4 of 4
Motif analysis
Genetic associations
EMBL-EBI estimated glomerular filtration rate, hip circumference adjusted for bmi, red blood cell count
GRASP advanced age-related macular degeneration (choroidal neovascularization) vs. no amd, body mass index (bmi), college completion, fasting blood glucose, fasting insulin, hdl cholesterol, homa-b, homa-ir, microalbuminuria, obesity (body mass index (bmi)), obesity with early age of onset (age >2), parkinsons disease, rheumatoid arthritis, years of education
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Adrenal_Gland, Artery_Aorta, Artery_Coronary, Artery_Tibial, Brain_Amygdala, Brain_Anterior_cingulate_cortex_BA24, Brain_Caudate_basal_ganglia, Brain_Cerebellar_Hemisphere, Brain_Cerebellum, Brain_Cortex, Brain_Frontal_Cortex_BA9, Brain_Hippocampus, Brain_Hypothalamus, Brain_Nucleus_accumbens_basal_ganglia, Brain_Putamen_basal_ganglia, Brain_Spinal_cord_cervical_c-1, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Cells_EBV-transformed_lymphocytes, Colon_Sigmoid, Colon_Transverse, Esophagus_Gastroesophageal_Junction, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Atrial_Appendage, Heart_Left_Ventricle, Liver, Lung, Minor_Salivary_Gland, Muscle_Skeletal, Nerve_Tibial, Ovary, Pancreas, Pituitary, Prostate, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Small_Intestine_Terminal_Ileum, Spleen, Stomach, Testis, Thyroid, Uterus, Vagina, Whole_Blood