rs7202333 chr16:68847592 C>T
- Sequence
ttagaggttggttagtgatcttaa[C/T]ggttagtggcaacaagagggaaat
- ASB in cell types
- A549 (lung carcinoma) GM12878 (female B-cells) KMS-11 K562 (myelogenous leukemia)
- ASB for transcription factors
- RAD21_HUMAN IKZF1_HUMAN TBX21_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| RAD21_HUMAN | 0.88 | -0.33 | 1.93 | n/a | n/a | |||
| IKZF1_HUMAN | 1.44 | -0.68 | 1.33 | n/a | No Hit | |||
| TBX21_HUMAN | 1.83 | -0.36 | 1.50 | n/a | No Hit |
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Motif analysis
No data available
Genetic associations
GRASP aortic valve calcium, eye color, fasting insulin, height, homa-b, hypertension (early onset hypertension), lp-pla2 mass, primary rhegmatogenous retinal detachment, tetrology of fallot
GTEx eQTL Breast_Mammary_Tissue, Colon_Transverse, Esophagus_Gastroesophageal_Junction, Esophagus_Mucosa, Liver, Lung, Nerve_Tibial, Pancreas, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Stomach, Thyroid