rs7205403 chr16:84116849 A>G
- Sequence
tcccaactctcgcgagactgggcg[A/G]ccgggccagcgaggcccacagctg
- ASB in cell types
- K562 (myelogenous leukemia) HEK293 (embryonic kidney) foreskin keratinocyte A549 (lung carcinoma)
- ASB for transcription factors
- CTCF_HUMAN MNT_HUMAN ATF7_HUMAN ATF1_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (A) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | 0.68 | 1.38 | 1.41 | n/a | No Hit | |||
| MNT_HUMAN | -2.44 | 2.83 | 2.83 | n/a | n/a | |||
| ATF7_HUMAN | n/a | 3.03 | 3.00 | n/a | n/a | |||
| ATF1_HUMAN | n/a | 2.70 | 2.50 | n/a | No Hit | |||
| NRF1_HUMAN | 0.54 | 0.51 | 2.40 | n/a | No Hit |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Artery_Aorta, Artery_Tibial, Brain_Anterior_cingulate_cortex_BA24, Brain_Caudate_basal_ganglia, Brain_Cerebellar_Hemisphere, Brain_Cerebellum, Brain_Cortex, Brain_Frontal_Cortex_BA9, Brain_Hippocampus, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Colon_Sigmoid, Colon_Transverse, Esophagus_Gastroesophageal_Junction, Esophagus_Mucosa, Esophagus_Muscularis, Lung, Muscle_Skeletal, Nerve_Tibial, Pancreas, Pituitary, Prostate, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Testis, Thyroid, Whole_Blood