rs7208422 chr17:78134494 A>T
- Sequence
cctacctgcgggtcaacgtactca[A/T]cgggctcctggtggttggggccat
- ASB in cell types
- K562 (myelogenous leukemia) A549 (lung carcinoma) GM12878 (female B-cells) KMS-11
- ASB for transcription factors
- CTCF_HUMAN HDAC2_HUMAN ZNF24_HUMAN HDAC1_HUMAN
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-log10 FDR of Ref (A) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | 0.33 | 0.73 | 1.62 | -1.05 | Weak Discordant | |||
| HDAC2_HUMAN | -1.64 | 1.93 | 2.00 | n/a | n/a | |||
| ZNF24_HUMAN | -0.47 | 1.77 | 2.00 | n/a | n/a | |||
| HDAC1_HUMAN | -0.63 | 1.41 | 2.00 | n/a | n/a |
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Motif analysis
