rs723928 chr20:50433830 C>T
- Sequence
aatttaaccgccaccaccccgccg[C/T]caccactagtctgacaacagccaa
- ASB in cell types
- K562 (myelogenous leukemia) HCT-116-RAD21-mAC
- ASB for transcription factors
- NFIC_HUMAN LMBL2_HUMAN IKZF1_HUMAN HDAC1_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| NFIC_HUMAN | n/a | 1.54 | 2.00 | n/a | No Hit | |||
| LMBL2_HUMAN | n/a | 2.84 | 2.00 | n/a | n/a | |||
| IKZF1_HUMAN | -1.50 | 2.53 | 2.00 | n/a | No Hit | |||
| HDAC1_HUMAN | -1.48 | 2.08 | 2.00 | n/a | n/a | |||
| MNT_HUMAN | n/a | 2.67 | 2.00 | n/a | n/a |
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Motif analysis
