rs7240747 chr18:2302771 C>T
- Sequence
caaggaattttaggtgtgtcctac[C/T]ggtcaatgattagtcactgttctt
- ASB in cell types
- K562 (myelogenous leukemia) MDA-MB-468 (breast adenocarcinoma) HeLa S3 (cervical adenocarcinoma)
- ASB for transcription factors
- PRD10_HUMAN STAT3_HUMAN NCOR1_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| PRD10_HUMAN | 1.61 | -1.54 | 1.00 | n/a | n/a | |||
| STAT3_HUMAN | 2.33 | -1.36 | 2.00 | n/a | No Hit | |||
| NCOR1_HUMAN | -0.23 | 1.06 | 1.33 | n/a | n/a |
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Motif analysis
No data available
Genetic associations
GRASP bipolar disorder, chronic kidney disease, habitual caffeine consumption, major depressive disorder