rs7251792 chr19:1021726 C>A
- Sequence
acgtcatagtcttcccgtgtccat[C/A]tcctgtggcgccactaaggttggc
- ASB in cell types
- K562 (myelogenous leukemia) HEK293 (embryonic kidney) HCT-116 (colon carcinoma) HL-60 (acute myeloid leukemia)
- ASB for transcription factors
- NRF1_HUMAN ZBT40_HUMAN E2F1_HUMAN ATF2_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| NRF1_HUMAN | -1.14 | 0.76 | 1.89 | n/a | No Hit | |||
| ZBT40_HUMAN | -2.12 | 2.73 | 1.94 | n/a | n/a | |||
| E2F1_HUMAN | -0.24 | 0.69 | 1.67 | n/a | No Hit | |||
| ATF2_HUMAN | -0.24 | 0.49 | 1.50 | n/a | No Hit | |||
| NFIC_HUMAN | n/a | 0.90 | 2.00 | n/a | No Hit |
Items per page:
1 – 5 of 51
Motif analysis
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Adrenal_Gland, Artery_Aorta, Artery_Coronary, Artery_Tibial, Brain_Cortex, Brain_Nucleus_accumbens_basal_ganglia, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Cells_EBV-transformed_lymphocytes, Colon_Sigmoid, Colon_Transverse, Esophagus_Gastroesophageal_Junction, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Atrial_Appendage, Heart_Left_Ventricle, Lung, Minor_Salivary_Gland, Muscle_Skeletal, Nerve_Tibial, Ovary, Pancreas, Pituitary, Prostate, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Small_Intestine_Terminal_Ileum, Spleen, Stomach, Testis, Thyroid, Uterus, Vagina, Whole_Blood