rs7259266 chr19:51340554 C>T
- Sequence
gagcagctggtcgccctctgagcg[C/T]atccggggcgtctcggctccctcc
- ASB in cell types
- K562 (myelogenous leukemia) HepG2 (hepatoblastoma)
- ASB for transcription factors
- RFOX2_HUMAN MNT_HUMAN KDM1A_HUMAN
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-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| RFOX2_HUMAN | 2.24 | 1.47 | 1.67 | n/a | n/a | |||
| MNT_HUMAN | -0.71 | 1.71 | 2.00 | n/a | n/a | |||
| KDM1A_HUMAN | -0.68 | 1.81 | 2.00 | n/a | n/a |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Artery_Tibial, Brain_Cerebellar_Hemisphere, Brain_Cerebellum, Esophagus_Mucosa, Heart_Atrial_Appendage, Lung, Muscle_Skeletal, Nerve_Tibial, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Testis