rs7259703 chr19:17351983 G>A
- Sequence
gacgtcgacatggcccgtgacgtc[G/A]ttgctgcatctcggtgtgacgtca
- ASB in cell types
- K562 (myelogenous leukemia) HEK293 (embryonic kidney)
- ASB for transcription factors
- ATF1_HUMAN ATF2_HUMAN ATF3_HUMAN CREB1_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| ATF1_HUMAN | n/a | 0.93 | 2.00 | 11.30 | Concordant | |||
| ATF2_HUMAN | -1.79 | 1.08 | 2.00 | 5.71 | Concordant | |||
| ATF3_HUMAN | n/a | 2.02 | 2.00 | 1.43 | Weak Concordant | |||
| CREB1_HUMAN | n/a | 2.64 | 2.00 | 8.25 | Concordant | |||
| CREM_HUMAN | n/a | 2.64 | 2.00 | 8.69 | Concordant |
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Motif analysis
Genetic associations
GRASP advanced age-related macular degeneration (geographic atrophy), diastolic blood pressure (dbp), height, systolic blood pressure (sbp), total cholesterol
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Artery_Aorta, Artery_Tibial, Brain_Cortex, Brain_Nucleus_accumbens_basal_ganglia, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Cells_EBV-transformed_lymphocytes, Colon_Sigmoid, Colon_Transverse, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Left_Ventricle, Lung, Nerve_Tibial, Pituitary, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Testis, Thyroid, Whole_Blood