rs726271 chr21:36153237 T>A
- Sequence
acaccagagggagccagtggttct[T/A]tccacatcagcttttctgtgaaac
- ASB in cell types
- HEK293T (embryonic kidney) T47D (invasive ductal carcinoma) VCaP (prostate carcinoma) HEK293 (embryonic kidney)
- ASB for transcription factors
- ZN384_HUMAN CTCF_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| ZN384_HUMAN | 2.34 | n/a | 3.00 | n/a | No Hit | |||
| CTCF_HUMAN | 0.62 | 0.56 | 1.49 | n/a | No Hit |
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Motif analysis
No data available
Genetic associations
GRASP bipolar disorder, fasting blood glucose, height, homa-ir, obesity with early age of onset (age >2)
GTEx eQTL Artery_Tibial, Brain_Anterior_cingulate_cortex_BA24, Brain_Cerebellar_Hemisphere, Brain_Cortex, Brain_Hypothalamus, Brain_Nucleus_accumbens_basal_ganglia, Brain_Putamen_basal_ganglia, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Colon_Transverse, Esophagus_Gastroesophageal_Junction, Esophagus_Mucosa, Minor_Salivary_Gland, Nerve_Tibial, Pituitary, Prostate, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Stomach, Testis, Thyroid, Vagina, Whole_Blood